MoBIE

MultiModal Big Image Data Sharing and Exploration

Welcome to the tutorials for MoBIE!

The MoBIE Fiji viewer is a Fiji plugin allowing easy exploration of big multi-modal images and associated tabular data.

Main Features:

Get started with the tutorials below:

Opening data

Advanced opening features

Supported file formats

Table data formats

Image data formats

Exploring image and segmentation data

Conext menu items

When you right click in the BigDataViewer window there will be a context menu, including the following items:

More documentation for the other tools will be added soon…

Image registration and annotation

Creating a MoBIE project

Please note that creating a MoBIE project is somewhat involved. For many cases, a MoBIE collection table will do the job and is easier to create and maintain.

Use-cases and example projects

Most of the examples in the tutorial are from Whole-body integration of gene expression and single-cell morphology, where MoBIE is used to visualize a EM volume of a Platynereis dumerilii larva, derived segmentations and gene expression profiles. MoBIE supports several other data modalities and combinations thereof, for example:

Live demonstrations

The MoBIE functionality is also demonstrated in a series of videos:

There is also a NEuBIAS BigData Seminar introducing MoBIE.

Citation

If you use MoBIE in your research please cite the MoBIE Nature Methods publication.

Contact

For questions or issues about MoBIE, please open a topic in the image.sc forum using the tag mobie. For specific technical issues or bugs, you can also open an issue on github.