Welcome to the tutorials for MoBIE!

The MoBIE Fiji viewer is a Fiji plugin allowing easy exploration of big multi-modal images and associated tabular data.

Main Features:

• Smooth browsing of large image data thanks to BigDataViewer
• Overlay many types of images in the same coordinate system (e.g. electron microscopy, light microscopy, segmentations…)
• Explore tabular data interactively alongside the images they’re derived from
• Easy sharing with colleagues (no need to download the raw images!)
• Easy sharing of points of interest in your data e.g. create bookmarks showing selected
• Image registration directly in MoBIE views, images and tables for your colleagues to explore
• … and more!

Get started with the tutorials below:

• Installation

Exploring existing projects

• Getting Started
• Exploring segmentations and tables
• Locations and views
• Viewing your own tables
• Creating your own views
• Annotation tutorial
• Grid views & image region tables

Advanced usage

• Opening projects from branches and with credentials
• Expert Mode

Making your own projects

• MoBIE Project Creator
• Scripting Project Creation in Fiji

MoBIE specification:

• MoBIE project specification

Live demonstrations

The MoBIE functionality is also demonstrated in a series of videos:

• MoBIE core functionality
• Creating MoBIE projects in Fiji
• Image Registration in MoBIE
• Interactive user annotation
• Timeseries in MoBIE

There is also a NeuBIAS BigData Seminar introducing MoBIE.

Citation

If you use MoBIE in your research please cite the MoBIE bioRxiv preprint.

Contact

If you have questions about MoBIE or run into issues using it, please either open an issue on github or create a new topic with the tag mobie on image.sc.